goatools.semsim.termwise.wang module¶

Wang’s termwise semantic similarity for GO terms

class goatools.semsim.termwise.wang.SsWang(goids, godag, relationships=None, rel2scf=None)[source]¶

Bases: object

Wang’s termwise semantic similarity for GO terms

dflt_rel2scf = {'is_a': 0.8, 'negatively_regulates': 0.6, 'part_of': 0.6, 'positively_regulates': 0.6, 'regulates': 0.6}¶

get_sim(go_a, go_b)[source]¶: Get Wang’s semantic similarity between two GO terms

prt_cfg(prt=stdout)[source]¶: Print reseacher-specified Wang configuration