goatools.gosubdag.plot package

Submodules

• goatools.gosubdag.plot.go2color module
  • Go2Color
    • Go2Color.kws_dct
    • Go2Color.alpha2col
    • Go2Color.key2col
    • Go2Color.get_bordercolor()
    • Go2Color.init_goid2color()
• goatools.gosubdag.plot.go_edge module
  • GoEdgeOpts
    • GoEdgeOpts.exp_keys
    • GoEdgeOpts.exp_elems
    • GoEdgeOpts.get_kws()
  • GoEdge
    • GoEdge.add_edges()
• goatools.gosubdag.plot.go_name_shorten module
  • get_short_plot_name()
  • shorten_go_name_ptbl1()
  • shorten_go_name_ptbl3()
  • replace_greek()
  • replace_greek_tex()
  • shorten_go_name_all()
• goatools.gosubdag.plot.go_node module
  • GoNodeOpts
    • GoNodeOpts.exp_keys
    • GoNodeOpts.exp_elems
    • GoNodeOpts.get_kws()
    • GoNodeOpts.get_present()
  • GoNode
    • GoNode.exclude
    • GoNode.get_node()
    • GoNode.str_fmthdr()
    • GoNode.get_node_text()
    • GoNode.get_hdr()
• goatools.gosubdag.plot.goea_results module
  • GoeaResults
    • GoeaResults.kws_set
    • GoeaResults.dflt_items_p_line
    • GoeaResults.fmtres
    • GoeaResults.alpha2col
    • GoeaResults.prt_summary()
    • GoeaResults.get_study_txt()
    • GoeaResults.set_goid2color_pval()
    • GoeaResults.get_goid2color_pval()
• goatools.gosubdag.plot.gosubdag_plot module
  • GoSubDagPlot
    • GoSubDagPlot.rel2edgekws
    • GoSubDagPlot.exp_keys
    • GoSubDagPlot.dflts
    • GoSubDagPlot.prt_goids()
    • GoSubDagPlot.plt_dag()
    • GoSubDagPlot.wr_pydot_dag()
    • GoSubDagPlot.get_pydot_graph()
    • GoSubDagPlot.get_goids_plt()
• goatools.gosubdag.plot.plot module
  • plt_goids()
  • plot_gos()
  • plot_results()
  • plt_goea_results()

Module contents