goatools.godag.reldepth module

Manages a user-specified subset of a GO DAG.

goatools.godag.reldepth.get_go2reldepth(goterms, relationship_set)[source]

Calculate depth by tracing optional relationship_set

class goatools.godag.reldepth.RelDepthCalc(relationship_set)[source]

Bases: object

Calculate depth by tracing optional relationship_set

get_go2reldepth_main(goterms)[source]

Calculate depth by tracing optional relationship_set