goatools.gosubdag.plot.go_node module

Create a pydot Node for a GO Term.

class goatools.gosubdag.plot.go_node.GoNodeOpts(gosubdag, **kws)

Bases: object

Processes GO Node plot args.

exp_keys = {'go2txt', 'goobj2fncname', 'objgoea', 'prt_flds'}

exp_elems = {'c2ps', 'childcnt', 'mark_alt_id', 'no_ldr', 'no_name', 'parentcnt', 'prt_pcnt', 'shorten'}

get_kws()

Only load keywords if they are specified by the user.

get_present()

Only store keywords if they are specified by the user.

class goatools.gosubdag.plot.go_node.GoNode(gosubdag, objcolor, optobj)

Bases: object

Creates pydot Node containing a GO term.

exclude = {'tfreq'}

get_node(goid, goobj)

Return pydot node.

str_fmthdr(goid, goobj)

Return hdr line seen inside a GO Term box.

get_node_text(goid, goobj)

Return a string to be printed in a GO term box.

get_hdr(goid, goobj)

Header for GO Term box. Ex: ‘G0001719 L6 D9 d3.’