goatools.goea package¶ Subpackages¶ goatools.goea.algorithms package Submodules goatools.goea.algorithms.base module GoeaContext GoeaAlgoResult GoeaAlgorithm goatools.goea.algorithms.classic module ClassicAlgorithm goatools.goea.algorithms.elim module ElimAlgorithm Module contents GoeaAlgorithm GoeaAlgorithm.name GoeaAlgorithm.default_alternative GoeaAlgorithm.pvals_precorrected GoeaAlgorithm.run() GoeaAlgoResult GoeaAlgoResult.go2flds GoeaAlgoResult.go2pval GoeaContext GoeaContext.calc_pvalue GoeaContext.go2popitems GoeaContext.go2studyitems GoeaContext.godag GoeaContext.goids GoeaContext.log GoeaContext.pop_n GoeaContext.propagate_counts GoeaContext.relationships GoeaContext.study_ids GoeaContext.study_n ClassicAlgorithm ClassicAlgorithm.name ClassicAlgorithm.run() ElimAlgorithm ElimAlgorithm.name ElimAlgorithm.default_alternative ElimAlgorithm.pvals_precorrected ElimAlgorithm.run() get_algorithm() Submodules¶ goatools.goea.go_enrichment_ns module GOEnrichmentStudyNS GOEnrichmentStudyNS.run_study() GOEnrichmentStudyNS.wr_xlsx() GOEnrichmentStudyNS.wr_tsv() GOEnrichmentStudyNS.wr_txt() GOEnrichmentStudyNS.get_assoc() Module contents¶