goatools.gosubdag package

Subpackages

• goatools.gosubdag.plot package
  • Submodules
    • goatools.gosubdag.plot.go2color module
      • Go2Color
    • goatools.gosubdag.plot.go_edge module
      • GoEdgeOpts
      • GoEdge
    • goatools.gosubdag.plot.go_name_shorten module
      • get_short_plot_name()
      • shorten_go_name_ptbl1()
      • shorten_go_name_ptbl3()
      • replace_greek()
      • replace_greek_tex()
      • shorten_go_name_all()
    • goatools.gosubdag.plot.go_node module
      • GoNodeOpts
      • GoNode
    • goatools.gosubdag.plot.goea_results module
      • GoeaResults
    • goatools.gosubdag.plot.gosubdag_plot module
      • GoSubDagPlot
    • goatools.gosubdag.plot.plot module
      • plt_goids()
      • plot_gos()
      • plot_results()
      • plt_goea_results()
  • Module contents
• goatools.gosubdag.rpt package
  • Submodules
    • goatools.gosubdag.rpt.wr_xlsx module
      • GoSubDagWr
      • read_d1_letter()
      • GoDepth1LettersWr
    • goatools.gosubdag.rpt.write_hierarchy module
      • WrHierGO
  • Module contents

Submodules

• goatools.gosubdag.go_edges module
  • get_edgesobj()
  • EdgesBase
    • EdgesBase.rm_gos()
    • EdgesBase.get_all_edge_nodes()
    • EdgesBase.chk_edges()
    • EdgesBase.chk_edges_nodes()
    • EdgesBase.get_c2ps()
  • EdgesRelatives
  • EdgesPath
    • EdgesPath.get_edges()
• goatools.gosubdag.go_most_specific module
  • get_most_specific_dcnt()
  • get_most_specific_tinfo()
  • get_most_specific_tinfo_dcnt()
• goatools.gosubdag.go_paths module
  • GoPaths
    • GoPaths.adjdir
    • GoPaths.get_paths_from_to()
    • GoPaths.prt_paths()
  • get_paths_goobjs()
  • paths2edges()
  • path2edges()
• goatools.gosubdag.go_tasks module
  • get_sorted_relationship()
  • TopologicalSortRelationships
  • get_go2obj_unique()
  • get_go2parents_go2obj()
  • get_go2children_go2obj()
  • get_goobjs_altgo2goobj()
  • add_alt_goids()
  • fill_main_goids()
  • fill_altgoids()
  • fill_relationshipobjs()
  • RelationshipFill
    • RelationshipFill.fill_relationshipgo2obj()
    • RelationshipFill.fill_relationshiprevgo2obj()
  • get_child_objs()
  • fill_childgoid2obj()
  • get_leaf_children()
  • goid_is_valid()
  • goids_valid()
  • chk_goids()
• goatools.gosubdag.godag_rcnt module
  • CountRelatives
    • CountRelatives.get_parents_letters()
    • CountRelatives.get_d1str()
• goatools.gosubdag.godag_rcnt_init module
  • CountRelativesInit
    • CountRelativesInit.get_goone2ntletter()
    • CountRelativesInit.get_depth2goobjs()
• goatools.gosubdag.gosubdag module
  • GoSubDag
    • GoSubDag.kws_ok
    • GoSubDag.prt_goids()
    • GoSubDag.get_nts()
    • GoSubDag.get_fncsortnt()
    • GoSubDag.get_go2nt()
    • GoSubDag.get_go2obj()
    • GoSubDag.get_vals()
    • GoSubDag.get_key_goids()
    • GoSubDag.get_ns2goids()
    • GoSubDag.prt_objdesc()
• goatools.gosubdag.gosubdag_init module
  • InitGOs
    • InitGOs.kws_aux_gos
  • InitFields
    • InitFields.exp_keys
    • InitFields.get_rcntobj()
    • InitFields.get_go2nt_all()
    • InitFields.get_prt_fmt()
    • InitFields.get_prt_hdr()
• goatools.gosubdag.utils module
  • extract_kwargs()
  • get_kwargs_set()
  • get_kwargs()
  • chk_kwargs()

Module contents