goatools.anno.gpad_reader module

Read a Gene Product Association Data (GPAD) and store the data in a Python object. Annotations available from the Gene Ontology Consortium:

GPAD format:

http://geneontology.org/page/gene-product-association-data-gpad-format

class goatools.anno.gpad_reader.GpadReader(filename=None, **kws)

Bases: AnnoReaderBase

dRead a Gene Product Association Data (GPAD) and store the data in a Python object.

exp_kws = {'godag', 'hdr_only', 'namespaces'}

get_relation_cnt()

Return a Counter containing all relations contained in the Annotation Extensions.