goatools.cli.prt_terms module

Command-line interface to print specified GO Terms from the DAG source

Usage:
  goatools prt_terms [GO ...] [GO_FILE]
  goatools prt_terms [GO ...] [GO_FILE] [options]

Options:
  -h --help                                 show this help message and exit

  -i <file.txt>, --ifile=<sections_in.txt>  Read or Write file name [default: sections_in.txt]
  -n <GO_name>, --name=<GO_name>            Name of a GO Term

  --obo=<file.obo>     Ontologies in obo file [default: go-basic.obo].

class goatools.cli.prt_terms.PrtGOterms

Bases: object

Command-line interface to print specified GO Terms from the DAG source.

kws_dict = {'GO', 'GO_FILE', 'name', 'obo'}

kws_set = {}

cli(args=None, prt=sys.stdout)

Command-line interface to print specified GO Terms from the DAG source .

goatools.cli.prt_terms.main(args=None)

Print GO terms from the command line.