goatools.cli.ncbi_gene_results_to_python module¶

Read a NCBI Gene gene_result.txt file and write a Python module

goatools.cli.ncbi_gene_results_to_python.ncbi_tsv_to_py(fin_tsv, fout_py=None, prt=stdout)[source]¶: Read a NCBI Gene file. Write data into one Python module per gene file

class goatools.cli.ncbi_gene_results_to_python.NCBIgeneToPythonCli[source]¶

Bases: object

Read a NCBI Gene gene_result.txt file and write a Python module.

argparser = ArgumentParser(prog='goatools ncbi_gene_results_to_python', usage=None, description='Convert a NCBI gene tsv file into a Python module', formatter_class=<class 'argparse.HelpFormatter'>, conflict_handler='error', add_help=True)¶

cli(args=None, prt=stdout)[source]¶: Command-line interface to print specified GO Terms from the DAG source .

tsv_to_py(fin_tsv, fout_py=None, prt=stdout)[source]¶: Read each NCBI Gene files. Write data into one Python module per gene file

tsv_to_py_each(fin_tsvs, fout_py=None, prt=stdout)[source]¶: Read each NCBI Gene files. Write data into one Python module per gene file

ncbi_tsv_to_py(fin_tsv, fout_py=None, prt=stdout)[source]¶: Read a NCBI Gene file. Write data into one Python module per gene file

tsv_to_py_all(fin_tsvs, fout_py=None, prt=stdout)[source]¶: Read all NCBI Gene files. Write all data into one Python module

goatools.cli.ncbi_gene_results_to_python.main(args=None)[source]¶: Convert NCBI Gene TSV results to Python modules.