goatools.cli.gos_get module¶

Get GO IDs from command-line arguments or from an ASCII file.

goatools.cli.gos_get.get_go2color(go_color_file)[source]¶: Get GO colors from file

class goatools.cli.gos_get.GetGOs(go2obj=None, max_gos=None)[source]¶

Bases: object

Return a list of GO IDs for plotting.

get_goids(go_args, fin_goids, prt)[source]¶: Return source GO IDs .

get_usrgos(fin_goids, prt)[source]¶: Return source GO IDs .

get_go2obj(goids)[source]¶: Return GO Terms for each user-specified GO ID. Note missing GO IDs.

static rdtxt_gos(go_file, prt)[source]¶: Read GO IDs from a file.

static rdtxt_gos_color(go_file)[source]¶: Read GO IDs from a file.

static get_goargs(go_args, prt)[source]¶: Get GO IDs and colors for GO IDs from the GO ID runtime arguments.