goatools.godag package

Submodules

• goatools.godag.consts module
  • chk_relationships()
• goatools.godag.go_tasks module
  • get_go2parents()
  • get_go2children()
  • get_go2parents_isa()
  • get_go2children_isa()
  • get_go2ancestors()
  • get_go2descendants()
  • get_go2depth()
  • get_id2parents()
  • get_id2children()
  • get_id2upper()
  • get_id2lower()
  • get_id2upperselect()
  • get_id2lowerselect()
  • get_relationship_targets()
  • IdToUpperSelect
  • IdToLowerSelect
  • CurNHigher
    • CurNHigher.get_id2obj_cur_n_high()
    • CurNHigher.fill_parentidid2obj_r0()
    • CurNHigher.fill_parentidid2obj_r1()
• goatools.godag.obo_optional_attributes module
  • OboOptionalAttrs
    • OboOptionalAttrs.optional_exp
    • OboOptionalAttrs.update_rec()
    • OboOptionalAttrs.init_datamembers()
    • OboOptionalAttrs.get_optional_attrs()
• goatools.godag.obographs module
  • get_obo_id()
  • get_fragment()
  • OboGraphsReader
• goatools.godag.prtfncs module
  • GoeaPrintFunctions
    • GoeaPrintFunctions.print_date()
    • GoeaPrintFunctions.print_results()
    • GoeaPrintFunctions.print_results_adj()
    • GoeaPrintFunctions.get_prtflds_default()
    • GoeaPrintFunctions.get_adj_records()
• goatools.godag.prttime module
  • GoDagTimed
    • GoDagTimed.load_dag()
  • prt_hms()
• goatools.godag.relationship_combos module
  • RelationshipCombos
    • RelationshipCombos.get_relationship_combos()
    • RelationshipCombos.chk_relationships_all()
    • RelationshipCombos.get_set()
• goatools.godag.relationship_str module
  • RelationshipStr
    • RelationshipStr.rel2chr
    • RelationshipStr.rev2chr
    • RelationshipStr.str_relationships()
    • RelationshipStr.str_rel_short()
    • RelationshipStr.str_relationships_rev()
    • RelationshipStr.prt_keys()
• goatools.godag.reldepth module
  • get_go2reldepth()
  • RelDepthCalc
    • RelDepthCalc.get_go2reldepth_main()
• goatools.godag.typedef module
  • TypeDef
  • add_to_typedef()

Module contents