# Notebook Images

# GO parents
![GO parents](reg_synapse_org.png)

## Nature paper GOEA results

### All Cellular Components
Big messy spaghetti plot. *Molecular function* and *Biological process* plots are bigger and messier.    
Colors indicate GOEA pvalues:
  * pval < 0.005 (light red)
  * pval < 0.01 (light orange)
  * pval < 0.05 (yellow)
![BIG PLOT](./nbt3102_CC.png)

### A subplot of GOEA results
As well as printing the big plot shown above. You can also create a sub-plot.    
Study gene counts are annotated to plots. e.g, *32 genes*
![Gene Counts](./nbt3102_MF_RNA_genecnt.png)

### A subplot of GOEA results
Instead of gene counts, shows a sampling of study gene Symbols on GO term boxes.    
e.g., *32 genes; Ayh, Csdel, Eef2*
![Gene Symbols](./nbt3102_MF_RNA_Symbols.png)

### A subplot showing signficant GO terms related to apoptosis
![apoptoitic](nbt3102_word_apoptotic.png)

Copyright (C) 2010-present, H Tang et al. All rights reserved.