This file is generated by test_nbt3102.py and is intended to confirm this statement in the GOATOOLS manuscript: We observed: 93 genes associated with RNA, 47 genes associated with translation, 70 genes associated with mitochondrial or mitochondrian, and 37 genes associated with ribosomal, as reported by GOATOOLS. RNA: 93 study genes, 6 GOs RNA GOs: GO:0006364, GO:0003723, GO:0003729, GO:0008097, GO:0019843, GO:0044822 0) BP GO:0006364 rRNA processing (8 genes) 1) MF GO:0003723 RNA binding (32 genes) 2) MF GO:0003729 mRNA binding (11 genes) 3) MF GO:0008097 5S rRNA binding (4 genes) 4) MF GO:0019843 rRNA binding (6 genes) 5) MF GO:0044822 poly(A) RNA binding (86 genes) 93 study genes: Ahnak, Aldoa, Anxa2, Arf1, Atp5a1, Auh, Btf3, Calr, Canx, Coro1a Csde1, Edf1, Eef1a1, Eef2, Eif3h, Eif4e2, Eif5a, Eno1, Fcf1, Fdps Gdi2, Gltscr2, Gm5506, Gnb2l1, H2-D1, H2-K1, H2-Q10, H2-Q7, Hdlbp, Hnrnpl Hsp90ab1, Hspa8, Immt, Lgals1, Mdh2, Mrpl45, Ndufv3, Npm1, P4hb, Pabpc1 Park7, Pdia3, Pfn1, Pkm, Poldip3, Psma6, R3hdm1, Rbm39, Rbm5, Rpl13 Rpl13a, Rpl14, Rpl18, Rpl18a, Rpl23, Rpl24, Rpl34, Rpl4, Rpl6, Rpl7 Rpl7a, Rpl8, Rplp0, Rps10, Rps11, Rps14, Rps15, Rps15a, Rps17, Rps19 Rps2, Rps20, Rps24, Rps25, Rps26, Rps3, Rps4x, Rps5, Rps7, Rps9 Rpsa, Samhd1, Slc25a5, Son, Sptbn1, Srp72, Srpk1, Sub1, Suclg1, Sumo1 Syf2, Ywhae, Zc3hav1 translation: 47 study genes, 5 GOs translation GOs: GO:0006412, GO:0006414, GO:0006417, GO:0003746, GO:0031369 0) BP GO:0006412 translation (41 genes) 1) BP GO:0006414 translational elongation (7 genes) 2) BP GO:0006417 regulation of translation (9 genes) 3) MF GO:0003746 translation elongation factor activity (5 genes) 4) MF GO:0031369 translation initiation factor binding (4 genes) 47 study genes: Eef1a1, Eef1b2, Eef1g, Eef2, Eif2s3y, Eif3h, Eif3i, Eif4e2, Eif4ebp1, Eif5a Gnb2l1, Poldip3, Ppp1ca, Rpl13, Rpl13a, Rpl14, Rpl18, Rpl18a, Rpl23, Rpl24 Rpl32, Rpl34, Rpl4, Rpl6, Rpl7, Rpl8, Rplp1, Rplp2, Rps11, Rps14 Rps15, Rps17, Rps19, Rps2, Rps20, Rps24, Rps3, Rps3a1, Rps4x, Rps5 Rps7, Rps9, Rpsa, Sars, Slc25a4, Slc25a5, Ucp2 mitochond: 70 study genes, 8 GOs mitochond GOs: GO:0051881, GO:0000275, GO:0005739, GO:0005743, GO:0005747, GO:0005753, GO:0005758, GO:0031966 0) BP GO:0051881 regulation of mitochondrial membrane potential (7 genes) 1) CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) (3 genes) 2) CC GO:0005739 mitochondrion (68 genes) 3) CC GO:0005743 mitochondrial inner membrane (28 genes) 4) CC GO:0005747 mitochondrial respiratory chain complex I (5 genes) 5) CC GO:0005753 mitochondrial proton-transporting ATP synthase complex (4 genes) 6) CC GO:0005758 mitochondrial intermembrane space (7 genes) 7) CC GO:0031966 mitochondrial membrane (6 genes) 70 study genes: 1500032L24Rik, 1600014C10Rik, Aco2, Ak2, Aldoa, Aldoc, Ap2m1, Atp5a1, Atp5b, Atp5d Atp5f1, Auh, Bcl2, Bnip3, Bnip3l, Bsg, Chchd3, Clic1, Cox4i1, Cox6a1 Cox7a2l, Csde1, Ctsb, Cyba, Dpysl2, Ech1, Fam162a, Fdps, Fth1, Gimap5 Gnb2l1, Gpx1, Gsk3b, Hemk1, Higd1a, Hk1, Hk2, Hsp90ab1, Immt, Ldha Mdh2, Mrpl45, Ndufb11, Ndufb7, Ndufv2, Ndufv3, Park7, Pdia3, Pkm, Prelid1 Prelid2, Rpl34, Rps14, Rps15a, Rps3, Sars, Sdhb, Slc25a4, Slc25a5, Sod1 Sri, Stat3, Suclg1, Tmbim6, Ubb, Ucp2, Uqcrc1, Uqcrq, Vdac1, Ywhae ribosomal: 37 study genes, 6 GOs ribosomal GOs: GO:0000028, GO:0042274, GO:0015934, GO:0015935, GO:0022625, GO:0022627 0) BP GO:0000028 ribosomal small subunit assembly (9 genes) 1) BP GO:0042274 ribosomal small subunit biogenesis (6 genes) 2) CC GO:0015934 large ribosomal subunit (4 genes) 3) CC GO:0015935 small ribosomal subunit (13 genes) 4) CC GO:0022625 cytosolic large ribosomal subunit (16 genes) 5) CC GO:0022627 cytosolic small ribosomal subunit (19 genes) 37 study genes: Gnb2l1, Npm1, Rpl13, Rpl13a, Rpl14, Rpl18, Rpl18a, Rpl23, Rpl24, Rpl32 Rpl34, Rpl4, Rpl6, Rpl7, Rpl7a, Rpl8, Rplp0, Rplp2, Rps10, Rps11 Rps14, Rps15, Rps15a, Rps17, Rps19, Rps2, Rps20, Rps24, Rps25, Rps26 Rps3, Rps3a1, Rps4x, Rps5, Rps7, Rps9, Rpsa ribosome: 41 study genes, 2 GOs ribosome GOs: GO:0005840, GO:0003735 0) CC GO:0005840 ribosome (35 genes) 1) MF GO:0003735 structural constituent of ribosome (38 genes) 41 study genes: Canx, Mrpl45, Rpl13, Rpl13a, Rpl14, Rpl18, Rpl18a, Rpl23, Rpl24, Rpl32 Rpl34, Rpl4, Rpl6, Rpl7, Rpl7a, Rpl8, Rplp0, Rplp1, Rplp2, Rps10 Rps11, Rps14, Rps15, Rps15a, Rps17, Rps19, Rps2, Rps20, Rps24, Rps25 Rps26, Rps3, Rps3a1, Rps4x, Rps5, Rps7, Rps9, Rpsa, Slc25a4, Slc25a5 Ucp2 adhesion: 53 study genes, 1 GOs adhesion GOs: GO:0005925 0) CC GO:0005925 focal adhesion (53 genes) 53 study genes: Actb, Actr2, Actr3, Ahnak, Anxa6, Arf1, Arpc1b, Arpc2, Arpc5, B2m Bsg, Calr, Cap1, Ccnd3, Cd81, Cfl1, Gdi2, Gna13, Hspa8, Lcp1 Msn, Npm1, P4hb, Pabpc1, Pdia3, Pfn1, Ptprc, Rac2, Rpl13a, Rpl18 Rpl23, Rpl4, Rpl6, Rpl7, Rpl7a, Rpl8, Rplp0, Rplp2, Rps10, Rps11 Rps14, Rps15, Rps17, Rps19, Rps2, Rps3, Rps5, Rps7, Rps9, Sdc4 Tln1, Vim, Ywhae endoplasmic: 49 study genes, 3 GOs endoplasmic GOs: GO:0005783, GO:0005790, GO:0070971 0) CC GO:0005783 endoplasmic reticulum (48 genes) 1) CC GO:0005790 smooth endoplasmic reticulum (5 genes) 2) CC GO:0070971 endoplasmic reticulum exit site (4 genes) 49 study genes: 0610007P14Rik, 1600014C10Rik, Bcl2, Bnip3, Bnip3l, Calr, Canx, Cst3, Ctsz, Dad1 Ddost, Eef1b2, Eef1g, Eif5a, Ergic3, Gimap1, H2-D1, H2-K1, H2-Q10, H2-Q7 Il24, Krtcap2, Npc2, P4hb, Park7, Pdia3, Pdia6, S100a10, Sar1b, Scd2 Sec11a, Sec22b, Sec61a1, Selk, Sema4f, Shisa5, Soat1, Sri, Srp72, Srpk1 Ssr2, Ssr3, Stt3b, Surf4, Tg, Tgfbr3, Tmbim6, Tmem50a, Vmp1 nucleotide: 46 study genes, 1 GOs nucleotide GOs: GO:0000166 0) MF GO:0000166 nucleotide binding (46 genes) 46 study genes: Actb, Actg1, Actr2, Actr3, Ak2, Arf1, Atp2b4, Atp5a1, Atp5b, Bub1b Camk2d, Camk4, Cdc42, Cdk6, Csnk1d, Eef1a1, Eef2, Eif2s3y, Galk1, Gimap1 Gimap4, Gimap5, Gna13, Gsk3b, Hk1, Hk2, Hnrnpl, Hsp90ab1, Hspa8, Jak3 Kif20b, Map3k1, Pabpc1, Pfkp, Pkm, Poldip3, Rac2, Rbm39, Rbm5, Rps24 Sar1b, Sars, Srpk1, Suclg1, Ube2d3, Vdac1 apoptotic: 42 study genes, 2 GOs apoptotic GOs: GO:0006915, GO:0043066 0) BP GO:0006915 apoptotic process (26 genes) 1) BP GO:0043066 negative regulation of apoptotic process (28 genes) 42 study genes: Aldoc, Bcl2, Birc5, Bnip3, Bnip3l, Bub1b, Cdkn1a, Cyfip2, D17Wsu104e, Dad1 Ddb1, Eif5a, Fam162a, Gadd45g, Glo1, Gnb2l1, Gpx1, Gsk3b, Higd1a, Hk1 Hsp90ab1, Il24, Il2rb, Lgals1, Mif, Ncoa3, Npm1, Park7, Pdcd10, Prelid1 Rbm5, Rps3, Shisa5, Sod1, Son, Srgn, Stat3, Tmbim6, Tnfrsf18, Ube2d3 Ucp2, Vdac1